as.data.frame.vivid.RdTakes a matrix of class vivid and turn it into a data frame
containing variable names, Vimp and Vint values, and the row and column index from the original
matrix.
# S3 method for vivid as.data.frame(x, row.names = NULL, optional = FALSE, ...)
| x | A matrix of class 'vivid' to be converted to a data frame. |
|---|---|
| row.names | NULL or a character vector giving the row names for the data frame. Missing values are not allowed. |
| optional | Logical. If TRUE, setting row names and converting column names (to syntactic names: see make.names) is optional. Note that all of R's base package as.data.frame() methods use optional only for column names treatment, basically with the meaning of data.frame(*, check.names = !optional). See also the make.names argument of the matrix method. |
| ... | Additional arguments to be passed to or from methods. |
A data frame of Vimp and Vint values and their index from the vivid matrix.
# \donttest{ library(ranger) aq <- na.omit(airquality) aq <- aq[1:20,]# for speed rF <- ranger(Ozone ~ ., data = aq, importance = "permutation") myMat <- vivi(fit = rF, data = aq, response = "Ozone") #> Agnostic variable importance method used. #> Calculating interactions... myDf <- as.data.frame(myMat) myDf #> Variable_1 Variable_2 Value Measure Row Col #> 1 Solar.R Solar.R 3.4550141 Vimp 1 1 #> 2 Day Solar.R 0.5226910 Vint 2 1 #> 3 Temp Solar.R 0.2842148 Vint 3 1 #> 4 Wind Solar.R 0.2063291 Vint 4 1 #> 5 Month Solar.R 0.0000000 Vint 5 1 #> 6 Solar.R Day 0.5226910 Vint 1 2 #> 7 Day Day 2.6768169 Vimp 2 2 #> 8 Temp Day 0.2555597 Vint 3 2 #> 9 Wind Day 0.2907211 Vint 4 2 #> 10 Month Day 0.0000000 Vint 5 2 #> 11 Solar.R Temp 0.2842148 Vint 1 3 #> 12 Day Temp 0.2555597 Vint 2 3 #> 13 Temp Temp 0.7854735 Vimp 3 3 #> 14 Wind Temp 0.2663974 Vint 4 3 #> 15 Month Temp 0.0000000 Vint 5 3 #> 16 Solar.R Wind 0.2063291 Vint 1 4 #> 17 Day Wind 0.2907211 Vint 2 4 #> 18 Temp Wind 0.2663974 Vint 3 4 #> 19 Wind Wind 2.1653009 Vimp 4 4 #> 20 Month Wind 0.0000000 Vint 5 4 #> 21 Solar.R Month 0.0000000 Vint 1 5 #> 22 Day Month 0.0000000 Vint 2 5 #> 23 Temp Month 0.0000000 Vint 3 5 #> 24 Wind Month 0.0000000 Vint 4 5 #> 25 Month Month 0.0000000 Vimp 5 5 # }